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BIOTAGE psq assay design software
Psq Assay Design Software, supplied by BIOTAGE, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/psq+assay+design+software/psq+assay+design+software/pm39377930-54-23-28
Average 90 stars, based on 1 article reviews
psq assay design software - by Bioz Stars, 2026-09
90/100 stars

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Multiplex Assay:

Article Title: Development and evaluation of a panel of newly screened Y chromosome InDels for inferring paternal ancestry information in Southwest China.
Article Snippet: 1 Department of Forensic Genetics, West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, 3-16 Renmin South Road, Chengdu, Sichuan 610041, China 2 Department of Laboratory Medicine, West China Hospital, Sichuan University, No. 37 Guoxue Alley, Wuhou District, Chengdu, Sichuan 610041, China 3 Department of Clinical Laboratory, People’s Hospital of Beichuan Qiang Autonomous County, Beichuan, Sichuan 622750, China 4 Department of Clinical Laboratory, Santai People’s Hospital, Santai, Sichuan 621100, China 5 Department of Clinical Laboratory, Renmin Hospital of Wuhan University, Wuhan, Hubei 430060, China Abstract Y-InDels (insertions/deletions) are genetic markers which are extremely understudied.. It is unknown whether this type of markers can be utilized for genetic ancestry inference.. We have developed an innovative Y chromosome ancestry inference system tailored for forensic applications.

Polymerase Chain Reaction:

Article Title: Development and evaluation of a panel of newly screened Y chromosome InDels for inferring paternal ancestry information in Southwest China.
Article Snippet: 1 Department of Forensic Genetics, West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, 3-16 Renmin South Road, Chengdu, Sichuan 610041, China 2 Department of Laboratory Medicine, West China Hospital, Sichuan University, No. 37 Guoxue Alley, Wuhou District, Chengdu, Sichuan 610041, China 3 Department of Clinical Laboratory, People’s Hospital of Beichuan Qiang Autonomous County, Beichuan, Sichuan 622750, China 4 Department of Clinical Laboratory, Santai People’s Hospital, Santai, Sichuan 621100, China 5 Department of Clinical Laboratory, Renmin Hospital of Wuhan University, Wuhan, Hubei 430060, China Abstract Y-InDels (insertions/deletions) are genetic markers which are extremely understudied.. It is unknown whether this type of markers can be utilized for genetic ancestry inference.. We have developed an innovative Y chromosome ancestry inference system tailored for forensic applications.

Article Title: Clinicopathological impacts of DNA methylation alterations on pancreatic ductal adenocarcinoma: prediction of early recurrence based on genome-wide DNA methylation profiling
Article Snippet: The results of Infinium assay have been deposited in the Gene Expression Omnibus (GEO) database ( https://www.ncbi.nlm.nih.gov/geo/ ) (accession number: GSE155353). .. The PCR and sequencing primers were designed using PSQ Assay Design Software Version 1.0.6 (Biotage, Uppsala, Sweden). .. To overcome any PCR bias, we optimized the PCR conditions: 0%, 50%, and 100% of the fully methylated control DNA (Epitect methylated human control DNA, QIAGEN) were used as a template to test the linearity of the protocol, as described previously (Fujimoto et al. ; Nagashio et al. ).

PSQ Assay:

Article Title: Development and evaluation of a panel of newly screened Y chromosome InDels for inferring paternal ancestry information in Southwest China.
Article Snippet: 1 Department of Forensic Genetics, West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, 3-16 Renmin South Road, Chengdu, Sichuan 610041, China 2 Department of Laboratory Medicine, West China Hospital, Sichuan University, No. 37 Guoxue Alley, Wuhou District, Chengdu, Sichuan 610041, China 3 Department of Clinical Laboratory, People’s Hospital of Beichuan Qiang Autonomous County, Beichuan, Sichuan 622750, China 4 Department of Clinical Laboratory, Santai People’s Hospital, Santai, Sichuan 621100, China 5 Department of Clinical Laboratory, Renmin Hospital of Wuhan University, Wuhan, Hubei 430060, China Abstract Y-InDels (insertions/deletions) are genetic markers which are extremely understudied.. It is unknown whether this type of markers can be utilized for genetic ancestry inference.. We have developed an innovative Y chromosome ancestry inference system tailored for forensic applications.

Article Title: DNA methylation changes during long-term in vitro cell culture are caused by epigenetic drift
Article Snippet: Pyrosequencing was performed on a PyroMark ID System (Biotage, Uppsala, Sweden). .. Primers for pyrosequencing were designed with the PSQ assay design software (Biotage; Supplemental Table ). .. DNAm levels were determined with the Pyro-Q-CpG Software (Biotage).

Article Title: Elevated methylation of the vault RNA2-1 promoter in maternal blood is associated with preterm birth
Article Snippet: Subsequently, we performed pyrosequencing to investigate the association between VTRNA2-1 methylation (cg04481923) and PTB in maternal blood samples (term, n = 39; preterm, n = 43). .. The primer sets for the VTRNA2-1 CpG sites were designed using PSQ Assay Design software (Biotage AB, Uppsala, Sweden). .. We performed pyrosequencing on cg04481923, where the primer set was designed with the highest score among seven CpGs.

Article Title: Silencing of Glutathione Peroxidase 3 through DNA Hypermethylation Is Associated with Lymph Node Metastasis in Gastric Carcinomas
Article Snippet: .. The Pyrosequencing primers were designed using PSQ Assay Design Software (Biotage, Uppsala, Sweden). ..

Article Title: Clinicopathological impacts of DNA methylation alterations on pancreatic ductal adenocarcinoma: prediction of early recurrence based on genome-wide DNA methylation profiling
Article Snippet: The results of Infinium assay have been deposited in the Gene Expression Omnibus (GEO) database ( https://www.ncbi.nlm.nih.gov/geo/ ) (accession number: GSE155353). .. The PCR and sequencing primers were designed using PSQ Assay Design Software Version 1.0.6 (Biotage, Uppsala, Sweden). .. To overcome any PCR bias, we optimized the PCR conditions: 0%, 50%, and 100% of the fully methylated control DNA (Epitect methylated human control DNA, QIAGEN) were used as a template to test the linearity of the protocol, as described previously (Fujimoto et al. ; Nagashio et al. ).

Article Title: DNA methylation changes during long-term in vitro cell culture are caused by epigenetic drift.
Article Snippet: Pyrosequencing was performed on a PyroMark ID System (Biotage, Uppsala, Sweden). .. Primers for pyrosequencing were designed with the PSQ assay design software (Biotage; Supplemental Table S3). .. DNAm levels were determined with the Pyro-Q-CpG Software (Biotage).

Article Title: Analysis of Influencing Factors on the Occurrence and Development of Gastric Cancer in High-Incidence Areas of Digestive Tract Tumors Based on High Methylation of GPX3 Gene
Article Snippet: .. The pyrosequencing primers for this experiment were designed using the PSQ Assay Design Software (Biotage, Uppsala, Sweden). ..

Article Title: Analysis of Influencing Factors on the Occurrence and Development of Gastric Cancer in High-Incidence Areas of Digestive Tract Tumors Based on High Methylation of GPX3 Gene.
Article Snippet: .. CpG island of GPX3 promoter identified by USC Norris CpG island search engine (http://www.uscnorris.com) has been previously mentioned.,e pyrosequencing primers for this experiment were designed using the PSQ Assay Design Software (Biotage, Uppsala, Sweden). ..

Software:

Article Title: Development and evaluation of a panel of newly screened Y chromosome InDels for inferring paternal ancestry information in Southwest China.
Article Snippet: 1 Department of Forensic Genetics, West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, 3-16 Renmin South Road, Chengdu, Sichuan 610041, China 2 Department of Laboratory Medicine, West China Hospital, Sichuan University, No. 37 Guoxue Alley, Wuhou District, Chengdu, Sichuan 610041, China 3 Department of Clinical Laboratory, People’s Hospital of Beichuan Qiang Autonomous County, Beichuan, Sichuan 622750, China 4 Department of Clinical Laboratory, Santai People’s Hospital, Santai, Sichuan 621100, China 5 Department of Clinical Laboratory, Renmin Hospital of Wuhan University, Wuhan, Hubei 430060, China Abstract Y-InDels (insertions/deletions) are genetic markers which are extremely understudied.. It is unknown whether this type of markers can be utilized for genetic ancestry inference.. We have developed an innovative Y chromosome ancestry inference system tailored for forensic applications.

Article Title: DNA methylation changes during long-term in vitro cell culture are caused by epigenetic drift
Article Snippet: Pyrosequencing was performed on a PyroMark ID System (Biotage, Uppsala, Sweden). .. Primers for pyrosequencing were designed with the PSQ assay design software (Biotage; Supplemental Table ). .. DNAm levels were determined with the Pyro-Q-CpG Software (Biotage).

Article Title: Elevated methylation of the vault RNA2-1 promoter in maternal blood is associated with preterm birth
Article Snippet: Subsequently, we performed pyrosequencing to investigate the association between VTRNA2-1 methylation (cg04481923) and PTB in maternal blood samples (term, n = 39; preterm, n = 43). .. The primer sets for the VTRNA2-1 CpG sites were designed using PSQ Assay Design software (Biotage AB, Uppsala, Sweden). .. We performed pyrosequencing on cg04481923, where the primer set was designed with the highest score among seven CpGs.

Article Title: Silencing of Glutathione Peroxidase 3 through DNA Hypermethylation Is Associated with Lymph Node Metastasis in Gastric Carcinomas
Article Snippet: .. The Pyrosequencing primers were designed using PSQ Assay Design Software (Biotage, Uppsala, Sweden). ..

Article Title: Clinicopathological impacts of DNA methylation alterations on pancreatic ductal adenocarcinoma: prediction of early recurrence based on genome-wide DNA methylation profiling
Article Snippet: The results of Infinium assay have been deposited in the Gene Expression Omnibus (GEO) database ( https://www.ncbi.nlm.nih.gov/geo/ ) (accession number: GSE155353). .. The PCR and sequencing primers were designed using PSQ Assay Design Software Version 1.0.6 (Biotage, Uppsala, Sweden). .. To overcome any PCR bias, we optimized the PCR conditions: 0%, 50%, and 100% of the fully methylated control DNA (Epitect methylated human control DNA, QIAGEN) were used as a template to test the linearity of the protocol, as described previously (Fujimoto et al. ; Nagashio et al. ).

Article Title: DNA methylation changes during long-term in vitro cell culture are caused by epigenetic drift.
Article Snippet: Pyrosequencing was performed on a PyroMark ID System (Biotage, Uppsala, Sweden). .. Primers for pyrosequencing were designed with the PSQ assay design software (Biotage; Supplemental Table S3). .. DNAm levels were determined with the Pyro-Q-CpG Software (Biotage).

Article Title: Analysis of Influencing Factors on the Occurrence and Development of Gastric Cancer in High-Incidence Areas of Digestive Tract Tumors Based on High Methylation of GPX3 Gene
Article Snippet: .. The pyrosequencing primers for this experiment were designed using the PSQ Assay Design Software (Biotage, Uppsala, Sweden). ..

Article Title: Analysis of Influencing Factors on the Occurrence and Development of Gastric Cancer in High-Incidence Areas of Digestive Tract Tumors Based on High Methylation of GPX3 Gene.
Article Snippet: .. CpG island of GPX3 promoter identified by USC Norris CpG island search engine (http://www.uscnorris.com) has been previously mentioned.,e pyrosequencing primers for this experiment were designed using the PSQ Assay Design Software (Biotage, Uppsala, Sweden). ..

Sequencing:

Article Title: Clinicopathological impacts of DNA methylation alterations on pancreatic ductal adenocarcinoma: prediction of early recurrence based on genome-wide DNA methylation profiling
Article Snippet: The results of Infinium assay have been deposited in the Gene Expression Omnibus (GEO) database ( https://www.ncbi.nlm.nih.gov/geo/ ) (accession number: GSE155353). .. The PCR and sequencing primers were designed using PSQ Assay Design Software Version 1.0.6 (Biotage, Uppsala, Sweden). .. To overcome any PCR bias, we optimized the PCR conditions: 0%, 50%, and 100% of the fully methylated control DNA (Epitect methylated human control DNA, QIAGEN) were used as a template to test the linearity of the protocol, as described previously (Fujimoto et al. ; Nagashio et al. ).



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